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Publications

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  1. D. Aerssens, L. Miret Casals, D. Gomez, D. Sousa-Neves, Y. Levy, M. De Vleeschouwer, A. Manicardi and A. Madder. Photo-induced crosslinking of modified coiled-coil structures uncovers an antiparallel strand orientation. Accepted Manuscript. Org. Biomol. Chem. (2023) 

  2. D. Gomez, W J. Pena Ccoa, Y. Singh, E. Rojas, and G. M. Hocky. Molecular paradigms for biological mechanosensing. In press, J. Phys. Chem. B (2021)

  3. D. Gomez, E. Teomy, A. Lesman and Y. Shokef. Target finding in fibrous biological environments. New J. of Phys. 22, 103008 (2020)

  4. D. Gomez, H. Klaus and S. Klumpp. On Protein Folding in Crowded Conditions.  J. Phys. Chem. Lett. 10:7650 (2019)

  5. D. Gomez, S. Natan, Y. Shokef, and A. Lesman. Mechanical interaction between cells facilitates molecular transport. Adv. Biosys., 1900192 (2019)

  6. D. Gomez, Y. Gavrilov and Y. Levy. Sliding mechanism at a coiled-coil interface. Biophys. J. 116(7):1228-1238 (2019)

  7. D. Krepel, D. Gomez, S. Klumpp and Y. Levy. Mechanism of facilitated diffusion during DNA search in crowded     environments. J. Phys. Chem. B. 120:11113-11122 (2016)

  8. D. Gomez and S. Klumpp. Facilitated diffusion in the presence of obstacles on the DNA. Phys. Chem. Chem. Phys. 18:11184-11192 (2016)

  9. D. Gomez and S. Klumpp. Biochemical reactions in crowded environments: revisiting the effects of volume exclusion with simulations. Front. Phys. 3:45 (2015) 

  10. D. Gomez, R. Marathe, V. Bierbaum and S. Klumpp. Modeling stochastic gene expression in growing cells. J. Theor. Biol. 348:1-11 (2014)

  11. R. Marathe, D. Gomez, and S. Klumpp. Sources of stochasticity in constitutive and autoregulated gene expression.   Physica Scripta. T151:014068 (2012)

  12. R. Marathe, V. Bierbaum, D. Gomez and S. Klumpp. Deterministic and stochastic descriptions of gene expression dynamics. J. Stat. Phys. 148:607-626 (2012)

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